"

Home > Research, Discovery & Progress > Program Overview

Research Projects

updated 01/09/2013

Project 1: Role of Gene Fusions in Prostate Cancer

Co-Leader: Arul Chinnaiyan, M.D., Ph.D.

Co-Leader: James E. Montie, M.D.

Employing a bioinformatics approach to analyze prostate cancer gene expression profiles, we identified recurrent gene fusions/translocations in the majority of prostate cancers (Tomlins et al, Science 2005).  This represents a landmark discovery emanating from this project and our larger SPORE grant.  Specifically, we identified the androgen regulatory elements of TMPRSS2 fused to the members of the ETS family of transcription factors including ERG, ETV1, and ETV4.  Analogous to hematological malignancies, gene fusions/translocations identified in prostate cancer may represent pathognomonic biomarkers and molecular sub-types of disease.   In this renewal application, we plan to focus our efforts on characterizing this new class of gene fusion biomarkers.

Preliminary work done by our group and others suggest that molecular subtypes as well as transcript variants of gene fusions may be associated with clinical sub-types of prostate cancer. The central hypothesis of this renewal application is that molecular sub-types based on gene fusions and variants will be useful predictors of the aggressive potential of clinically localized prostate cancer and thus guide treatment.   Given this, we propose the following Aims:

Specific Aim 1: Characterization of Oncogenic ETS Gene Fusions in Prostate Cancer. The goal of this Aim was to develop the necessary tools to enable the systematic identification of ETS gene fusions in prostate cancers including gene fusion and variants.

Specific Aim 2: Determine the role of ETS family gene fusions in prostate cancer cell lines. Here we proposed to over-express ERG and ETV1 in benign prostate epithelial cells and benign immortalized RWPE cells and monitor their phenotype. Similarly using prostate cancer cell lines, we plan to knock-down ERG gene fusions in VCaP and NCI-H660 cells and ETV1 gene fusions in LNCaP and MDA=PCA2b cells. Various phenotypic readouts will be assessed including cell proliferation, apoptosis, cell invasion, growth in soft agar, and global gene expression profiles.

Specific Aim 3: Characterize the phenotype of androgen-regulated ETS transgenic mice. Here we will systematically analyze the androgen-regulated ERG and ETV1 transgenic mice we created. We will characterize the morphatic lesions harbored in these mice. This assessment will include immnohistochemical analysis as well as global gene expression assessment. We will also cross the ETS transgenic mice with mice in which PTEN is conditionally knocked out in the prostate to determine the cooperative effects of these two important aberrations in prostate cancer progression.

Publications:

  1. Brenner JC, Ateeq B, Li Y, Yocum AK, Cao Q, Asangani IA, Patel S, Wang X, Liang H, Yu J, Palanisamy N, Siddiqui J, Yan W, Cao X, Mehra R, Sabolch A, Basrur V, Lonigro RJ, Yang J, Tomlins SA, Maher CA, Elenitoba-Johnson KS, Hussain M, Navone NM, Pienta KJ, Varambally S, Feng FY, Chinnaiyan AM. Mechanistic rationale for inhibition of poly(ADP-ribose) polymerase in ETS gene fusion-positive prostate cancer. Cancer Cell. 2011 May 17;19(5):664-78. PubMed PMID: 21575865; PubMed Central PMCID: PMC3113473.

  2. Wang XS, Shankar S, Dhanasekaran SM, Ateeq B, Sasaki AT, Jing X, Robinson D, Cao Q, Prensner JR, Yocum AK, Wang R, Fries DF, Han B, Asangani IA, Cao X, Li Y, Omenn GS, Pflueger D, Gopalan A, Reuter VE, Kahoud ER, Cantley LC, Rubin MA, Palanisamy N, Varambally S, Chinnaiyan AM. Characterization of KRAS Rearrangements in Metastatic Prostate Cancer. Cancer Discov. 2011 Jun 1;1(1):35-43. PubMed PMID: 22140652; PubMed Central PMCID: PMC3227139.

  3. Mani RS, Iyer MK, Cao Q, Brenner JC, Wang L, Ghosh A, Cao X, Lonigro RJ, Tomlins SA, Varambally S, Chinnaiyan AM. TMPRSS2-ERG-mediated feed-forward regulation of wild-type ERG in human prostate cancers. Cancer Res. 2011 Aug 15;71(16):5387-92. Epub 2011 Jun 15. PubMed PMID: 21676887; PubMed Central PMCID: PMC3156376.

  4. Prensner JR, Iyer MK, Balbin OA, Dhanasekaran SM, Cao Q, Brenner JC, Laxman B, Asangani IA, Grasso CS, Kominsky HD, Cao X, Jing X, Wang X, Siddiqui J, Wei JT, Robinson D, Iyer HK, Palanisamy N, Maher CA, Chinnaiyan AM. Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression. Nat Biotechnol. 2011 Jul 31;29(8):742-9. doi: 10.1038/nbt.1914. PubMed PMID: 21804560; PubMed Central PMCID: PMC3152676.

  5. Tomlins SA, Aubin SM, Siddiqui J, Lonigro RJ, Sefton-Miller L, Miick S, Williamsen S, Hodge P, Meinke J, Blase A, Penabella Y, Day JR, Varambally R, Han B, Wood D, Wang L, Sanda MG, Rubin MA, Rhodes DR, Hollenbeck B, Sakamoto K, Silberstein JL, Fradet Y, Amberson JB, Meyers S, Palanisamy N, Rittenhouse H, Wei JT, Groskopf J, Chinnaiyan AM. Urine TMPRSS2:ERG fusion transcript stratifies prostate cancer risk in men with elevated serum PSA. Sci Transl Med. 2011 Aug 3;3(94):94ra72. PubMed PMID: 21813756; PubMed Central PMCID: PMC3245713.

  6. Iyer MK, Chinnaiyan AM, Maher CA. ChimeraScan: a tool for identifying chimeric transcription in sequencing data. Bioinformatics. 2011 Oct 15;27(20):2903-4. Epub 2011 Aug 11. PubMed PMID: 21840877; PubMed Central PMCID: PMC3187648.

 

Return to top


Project 2: Preclinical Evaluation and Clinical Development of Potent Small-Molecule Inhibitors of the MDM2-p53 Interaction as a New Therapy for the Treatment of Human Prostate Cancer

Co-Leader: Shaomeng Wang, Ph.D.

Co-Leader: David C. Smith, M.D.

The p53 tumor suppressor plays a central role in controlling cell cycle progression and apoptosis and is an attractive cancer therapeutic target because its tumor suppressor activity can be stimulated to eradicate tumor cells. Recent studies have suggested that stimulation of the p53 activity may be a powerful strategy for the treatment of the majority of hormone-refractory prostate cancer. In p53 wild-type cancer cells, the p53 activity is effectively inhibited by its endogenous inhibitor, the human murine double minute 2 (MDM2) onco-protein by multiple mechanisms. A new therapeutic approach to stimulation of the activity of p53 is through inhibition of its interaction with the MDM2 protein using non-peptide small-molecule MDM2 inhibitors. Design of non-peptide small-molecule inhibitors of the MDM2-p53 interaction is being intensely pursed as a new cancer therapeutic strategy. In the last two years, with the support of the University of Michigan SPORE grant, we have designed and developed a class of highly potent, non-peptide, orally available, small-molecule inhibitors of MDM2. Based upon our promising in vitro and in vivo results, we are advancing our most promising lead compound into human clinical trials as a new therapy for the treatment of human cancer. Our long-term transitional goal in this SPORE renewal project is to develop a highly potent and promising small-molecule inhibitor of the MDM2-p53 interaction (hereafter called MDM2 inhibitor) as a new therapy for the treatment of advanced human prostate cancer. Toward this goal, we will carry out the following specific Aims:

Aim 1: Determination of the in vitro activity, specificity and molecular mechanism of action of our potent MDM2 inhibitors in a panel of prostate cancer cell lines and normal cells.

Aim 2: Determination of the in vivo antitumor activity and molecular mechanism of action of our potent MDM2 inhibitors in animal models of human prostate cancer and examination of any toxicity to animals.

Aim 3: Performance of a Phase II clinical trial of our clinical lead compound in prostate cancer patients with androgen-independent disease. Successfully carried out, this SPORE project will pave the way for the development of an entirely new class of molecularly targeted anti-cancer therapy for the treatment of advanced prostate cancer.

 

Publications:

  • Shangary S, Wang S. Small-molecule inhibitors of the MDM2-p53 protein-protein interaction to reactivate p53 function: a novel approach for cancer therapy. Annu Rev Pharmacol Toxicol. 2009;49:223-41. PMCID: PMC2676449.
  • Shangary S, Wang S. Targeting the MDM2-p53 interaction for cancer therapy. Clin Cancer Res. 2008 Sep 1;14(17):5318-24. PMCID: PMC2676446.
  • Yu S, Qin D, Shangary S, Chen J, Wang G, Ding K, McEachern D, Qiu S, Nikolovska-Coleska Z, Miller R, Kang S, Yang D, Wang S. Potent and orally active small-molecule inhibitors of the MDM2-p53 interaction. J Med Chem. 2009 Dec 24;52(24):7970-3. PMCID : PMC2795799.

Return to top



Project 3: Defining Genetic Risk Factors for Brothers of Men with Prostate Cancer

Co-Leader: Kathleen A. Cooney, M.D.

Co-Leader: Julie A. Douglas, Ph.D.

While family history is an important risk factor for prostate cancer, localization of highly penetrant prostate cancer susceptibility genes using traditional linkage analysis has been challenging. In this SPORE project, we used our ongoing study of hereditary prostate cancer study (the University of Michigan Prostate Cancer Genetics Project or PCGP) to identify a set of sibling pairs discordant for prostate cancer. These siblings can be used to implicate genes of modest penetrance using family-based association methods. Since the sibships are derived from families with early-onset and/or hereditary prostate cancer, they are relatively enriched for genetic susceptibility factors. During the first five years of funding, we have established the discordant sibling pair (DSP) project as a resource for characterizing germline variants associated with prostate cancer. To date, we have studied 14 candidate genes and have shown that single nucleotide polymorphisms (SNPs) in CYP17, BRCA1, FHIT, SDF1, CXCR4, and AMACR are significantly associated with prostate cancer. Our most compelling association finding involves a glutamine-to-arginine substitution at codon 356 (Gln356Arg) in exon 11 of the BRCA1 gene that accounts for some (but not all) of our prior evidence of prostate cancer linkage to chromosome 17q21 in a PCGP genome-wide linkage scan. Non-synonymous SNPs (nsSNPs), such as BRCA1 Gln356Arg, result in single amino acid substitutions and have been shown to account for many of the genetic changes that influence Mendelian disorders. In this SPORE renewal project, we propose a genome-wide approach focusing on nsSNPs in known genes, including many genes previously implicated in cancer. This proposed genome-wide approach has the advantage of testing for variants that are likely to be causative and has been successfully used to identify novel candidate loci for type 1 diabetes and Crohn disease.

To test the hypothesis that common nsSNPs in BRCA1 and other candidate genes are associated with prostate cancer, the following two Specific Aims are proposed:

Specific Aim 1: Develop our new, formal collaboration with the SPORE program at Johns Hopkins University to follow-up and generalize significant prostate cancer associations, including our previously reported prostate cancer association with BRCA1 Gln356Arg.

Specific Aim 2. Complete a replication-based genome-wide association study of early-onset and familial prostate cancer using more than 11,500 nsSNPs that cover approximately 6,500 known human genes, including a disproportionate number in cancer-related pathways.

 

Publications

  1. *Wang Y, *Ray AM, Johnson EK, Zuhlke KA, Cooney KA, Lange EM. (*These authors contributed equally to this work) Evidence for an association between prostate cancer and chromosome 8q24 and 10q11 genetic variants in African American men: The Flint Men's Health Study. Prostate 71(3):225-231, 2011. PMID:20717903. PMCID: In process.

  2. Catalona WJ, Bailey-Wilson JE, Cannon-Albright LA, Camp NJ, Chanock SJ, Cooney KA, Easton DF, Eeles RA, FitzGerald LM, Freedman ML, Gudmundsson J, Kittles RA, Margulies EH, Ostrander EA, Rebbeck TR, Stanford JL, Thibodeau SN, Witte JS, Isaacs WB. NCI Prostate Cancer Genetics Working Group Workshop. Cancer Research 71(10):3442-6, 2011. PM:21558387. PMCID: PMC3096727.

  3. *Bauer CM, *Ishak MB, Johnson EK, Beebe-Dimmer JL, Cooney KA. (*These authors contributed equally to this work) Prevalence and correlates of vitamin and supplement usage among men with a family history of prostate cancer. Integrative Cancer Therapies 2011, Aug. 5 epub ahead of print. PMID: 21821653. PMCID: PMC3213317 [Available 2013/2/5].

  4. Jin G, Lu L, Cooney KA, Ray AM, Zuhlke KA, Lange EM, Cannon-Albright LA, Camp NJ, Teerlink CC, Fitzgerald LM, Stanford JL, Wiley KE, Isaacs SD, Walsh PC, Foulkes WD, Giles GG, Hopper JL, Severi G, Eeles R, Easton D, Kote-Jarai Z, Guy M, Rinckleb A, Maier C, Vogel W, Cancel-Tassin G, Egrot C, Cussenot O, Thibodeau SN, McDonnell SK, Schaid DJ, Wiklund F, Gronberg H, Emanuelsson M, Whittemore AS, Oakley-Girvan I, Hsieh CL, Wahlfors T, Tammela T, Schleutker J, Catalona WJ, Zheng SL, Ostrander EA, Isaacs WB, Xu J; International Consortium for Prostate Cancer Genetics. Validation of prostate cancer risk-related loci identified from genome-wide association studies using family-based association analysis: evidence from the International Consortium for Prostate Cancer Genetics (ICPCG). Hum Genet. 2011 Dec 25. [Epub ahead of print] PMID:22198737. PMCID: In process.

  5. Ewing CM, Ray AM, Lange EM, Zuhlke KA, Robbins CM, Tembe WD, Wiley KE, Isaacs SD, Johng D, Wang Y, Bizon C, Yan G, Gielzak M, Partin AW, Shanmugam V, Izatt T, Sinari S, Craig DW, Zheng SL, Walsh PC, Montie JE, Xu J, Carpten JD, Isaacs WB, Cooney KA. Germline mutations in HOXB13 and prostate-cancer risk. N Engl J Med. 366(2):141-9, 2012. PMID:22236224. PMCID: In process. NIHMS356978.

 

Return to top


Project 4: Inhibition of CCL2 to Treat Metastatic Prostate Cancer

Co-Leader: Kenneth J. Pienta, M.D.

Co-Leader: Maha Hussain, M.D.

We have identified monocyte chemoattractact protein-1 (MCP-1, CCL2) as a novel potent regulator of prostate cancer proliferation and migration. The ability of CCL2 to influence prostate cancer (PCa) tumorigenesis and metastasis may occur via direct promotional effect on tumor cell growth and function as well as a modulatory effect on the tumor microenvironment by promoting macrophage mobilization and infiltration into the tumor bed. We have demonstrated that PCa cells in vitro and in human cancer tissues exhibit an upregulation of the CCL2 receptor, CCR2. In addition, a major role of CCL2 on tumor growth and metastasis has been linked to its regulatory role in mediating monocyte / macrophage infiltration into the tumor microenvironment and stimulating a phenotypic change within these immune cells to promote tumor growth (tumor associated macrophages, TAMs). CCL2 has previously been shown to be an important determinant of monocyte / macrophage infiltration in breast, cervix and pancreatic carcinomas and the levels of CCL2 expression have been correlated with the involvement of lymphocyte and macrophage localization in secondary sites of tumor formation. We were the first to establish a direct stimulatory role of CCL2 on PCa cells in vitro. Utilizing anti-human (CNTO888) and anti-mouse (C1142) specific neutralizing antibodies to CCL2, we have demonstrated an inhibition of prostate tumor growth and migration in vivo through direct effects on the PCa cells as well as blocking the infiltration of TAMs into the tumors. The availability of the human antibody CNTO888 to CCL2 will allow us to test our observations and hypothesis in humans: Overall Proposal Hypothesis: Systemic inhibition of monocyte chemoattractant protein -1 (MCP-1; CCL2) will be an effective treatment for prostate cancer. To test this hypothesis we will perform the following specific aims: 1) We will dissect the role of increased CCL2 expression on monocyte mobilization in response to prostate cancer, 2) we will dissect the role of CCL2 on macrophage infiltration and subsequent tumor growth and metastasis of prostate cancer, and 3) we will test the human antibody CNTO888 to CCL2 in patients with prostate cancer. Completion of these experiments will define the role of infiltrating macrophages in prostate cancer biology and characterize the validity of targeting CCL2 for the treatment of advanced prostate cancer.

Publications

  1. Roca H, Craig MJ, Ying C, Varsos ZS, Czarnieski P, Alva AS, Hernandez J, Fuller D, Daignault S, Healy PN, Pienta KJ. IL-4 induces proliferation in prostate cancer PC3 cells under nutrient-depletion stress through the activation of the JNK-pathway and survivin upregulation. J Cell Biochem. 2011 Dec 15. PMID: 22174091. PMCID: PMC3337359..

  2. Hsiao AY, Tung YC, Qu X, Patel LR, Pienta KJ, Takayama S. 384 hanging drop arrays give excellent Z-factors and allow versatile formation of co-culture spheroids. Biotechnol Bioeng. 2011 Dec 7. PMID: 22161651. PMCID: PMC3306496 [Available on 2013/5/1]

  3. Mehra R, Kumar-Sinha C, Shankar S, Lonigro RJ, Jing X, Philips NE, Siddiqui J, Han B, Cao X, Smith DC, Shah RB, Chinnaiyan AM, Pienta KJ. Characterization of bone metastases from rapid autopsies of prostate cancer patients. Clin Cancer Res. 2011 Jun 15;17(12):3924-32. PMID: 21555375. PMCID: PMC3117947 [Available on 2012/6/15]

  4. Zhang J, Sud S, Mizutani K, Gyetko MR, Pienta KJ. Activation of urokinase plasminogen activator and its receptor axis is essential for macrophage infiltration in a prostate cancer mouse model. Neoplasia. 2011 Jan;13(1):23-30. PMID: 21245937. PMCID: PMC3022425

 

Return to top


Small Text SizeMedium Text SizeLarge Text Size
Adjust text size

Speak with a Cancer nurse: 1-800-865-1125